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Posted by: privet caboose
Or, and this makes more sense, Carter/Emile/Jun were Headhunters and not part of the standard Spartan III company. It was stated the headhunters were trained in secret from the other III's. They're probably the most classified fighters in the UNSC. It makes sense considering that Jun, Carter, and Emile are all much older than the rest of the Company(which was specifically stated to be made up of 4, 5, and 6 year old children.)
I'd also like to believe Six was a headhunter as well. However, after Ackerson failed to get his hands on Tom, he dipped into the Headhunter pool and pulled Six out to be "his private grim reaper."
Kat was pulled from Cartwheel, which means she was a standard Beta Spartan, and not a headhunter. This also explains why Kat and Six have virtually no chemistry. Had they grown up and trained together, there would be more of an attachment. But based on the game, Kat and Six might as well be from different companies.
These were my suspicions too, the lack of relationship between Kat and Six is actually what spurred the thought.